Index

B

batch() (in module state_moseq.util)

C

center_embedding() (in module state_moseq.util) compare_states() (in module state_moseq.util)

count_transitions() (in module state_moseq.util) crop_image() (in module state_moseq.viz) cross_sequence_mutual_information() (in module state_moseq.util)

E

estimate_emission_params() (in module state_moseq.hhmm_efficient)

F

filtered_states() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

fit_gibbs() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) fit_gradient_descent() (in module state_moseq.hhmm_efficient)

G

generate_grid_movies() (in module state_moseq.viz) get_adjusted_rand() (in module state_moseq.util) get_durations() (in module state_moseq.util)

get_frequencies() (in module state_moseq.util) get_syllable_trans_probs() (in module state_moseq.hhmm_efficient) grid_movie() (in module state_moseq.viz)

I

initialize_params() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

L

lagged_mutual_information() (in module state_moseq.util) load_hdf5() (in module state_moseq.util) log_joint_prob() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

log_params_prob() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) logits_to_probs() (in module state_moseq.util) lower_dim() (in module state_moseq.util)

M

marginal_loglik() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) module state_moseq.hhmm_efficient state_moseq.hhmm_standard state_moseq.util state_moseq.viz

N

na (in module state_moseq.hhmm_standard)

normal_inverse_gamma_posterior() (in module state_moseq.util)

O

obs_log_likelihoods() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

P

plot_sankey() (in module state_moseq.viz) predicted_states() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

probs_to_logits() (in module state_moseq.util) psd_inv() (in module state_moseq.util) psd_solve() (in module state_moseq.util)

R

raise_dim() (in module state_moseq.util) random_params() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) resample_emission_params() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

resample_params() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) resample_states() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) resample_trans_probs() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

S

sample_hmc() (in module state_moseq.util) sample_instances() (in module state_moseq.util) sample_laplace() (in module state_moseq.util) save_hdf5() (in module state_moseq.util) simulate() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard) simulate_markov_chain() (in module state_moseq.util) smoothed_states() (in module state_moseq.hhmm_efficient) (in module state_moseq.hhmm_standard)

state_moseq.hhmm_efficient module state_moseq.hhmm_standard module state_moseq.util module state_moseq.viz module symmetrize() (in module state_moseq.util)

U

unbatch() (in module state_moseq.util)

W

write_video_clip() (in module state_moseq.viz)